Andreas Wilm

782755 T>TAG predicted by LF2.15 on BAM files processed by both versions: $ zgrep 78275 *vcf.gz NC_000912_Mpneumoniae_comb.lf215.lf215.vcf.gz:NC_000912.1 782755 . T TAG 589 PASS DP=100;AF=0.200000;SB=3;DP4=41,40,8,12;INDEL;HRUN=1 NC_000912_Mpneumoniae_comb.lf3.lf215.vcf.gz:NC_000912.1 782755 . T TAG 589...

Looks like off by one error also for deletions. Unclear why this worked there. Needs full testing against LF215 on simulated data but see also https://github.com/andreas-wilm/lofreq3/issues/40