Anders Goncalves da Silva

I am closing the issue. Please reopen if necessary.

@karthick1087 we haven't done too many tests with Snippy. We are using the ARTIC v3 protocol for sequencing (tiled amplicons), for which iVar is better suited as it actually masks...

Hi @shawndy. The errors seems to imply that either the path is wrong, or the formatting is incorrect. Can you confirm the path is correct with: `ls /home/shawndy/Biomatics/snippy/C01/Sample1.R1.fastq` And, can...

@anna1457 a common gotcha with GBK files is that they sometimes do not include the sequence data, just the annotations. Can you open the GBK file in a text editor...

We need to add a test for sequence data being present in GBK files.

No worries, best of luck.

Thank you for your interest in Snippy. At the moment, our focus is all On our SARS-CoV-2 response. A future version of Snippy will most likely include support for long...

The same is true for `mlst.csv`. But, I am handling it in my `nullarbor_translate`. Let me know if you change it, as it will break my code --- although, easily...

Hi @BettyAC. How much RAM does the machine you are running have? And what organism are you running? skesa is memory intensive. If you are running on a machine with...

Can you upload nullarbor.log, please?