Anders Goncalves da Silva

@maesaar we have not dug too deeply into that yet. But, it does suggest some issue with the underlying FASTQ data. Is this warning associated with a particular sample? Are...

did you concatenate in the same order? L1, L2, L3, L4 > R1 L1, L2, L3, L4 > R2 That may explain the issue you are observing. And, emailing a...

@cimendes I am trying to replicate what you did. 1. I found windows line endings in your abundance file. That might throw things off a big (`dos2unix` is your go...

@cimendes I am still waiting for it to finish running, but I think the issue is BioPython 1.79 (issue #207). So, by downgrading to BioPython 1.78, and using the FASTA...

Hahaha... You are welcome. But, don't thank me yet. Make sure it works. :)

@cimendes, I am sorry to say, it has now run long enough that I have reached the same error: ``` Traceback (most recent call last): File "/home/agoncalves/.conda/envs/iss/bin/iss", line 10, in...

I am trying downgrading joblib to 0.17.0 --- as per the pipenv.lock file.

Hummm... @cimendes still no joy for me. Any luck for you? I am trying a slightly different approach. I cloned the repo, and created an environment using pipenv and the...

From a conversation with the author, at the moment only Kraken1. Kraken2 may be supported in the future.

You have to make sure you have BioPerl version 1.72 or above installed. Can you try updating/upgrading BioPerl? It seems the earlier recipes on Conda have a bug.