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Published 20 hours ago • verified publisher icon tseemann

error running nullarbor skesa

Open BettyAC opened this issue 4 years ago • 3 comments
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I am getting the below error Memory provided is insufficient to do runs in 10 cycles for the read coverage. We find that 16 Gb for 20x coverage of a 5 Mb genome is usually sufficient make: *** [Makefile:133: s4/contigs.fa] Error 1 make: Leaving directory '...'

BettyAC avatar Jun 16 '21 10:06 BettyAC

Hi @BettyAC. How much RAM does the machine you are running have? And what organism are you running? skesa is memory intensive. If you are running on a machine with less than 32GB of RAM you are going to get that error.

andersgs avatar Jun 16 '21 12:06 andersgs

Hi it has 128 GB ram and I am running TB

BettyAC avatar Jun 16 '21 12:06 BettyAC

Can you upload nullarbor.log, please?

andersgs avatar Jun 16 '21 13:06 andersgs