Anders Goncalves da Silva

@ramnageena11 is it ok to close the issue then?

Did you try: `conda install -c bioconda perl-bioperl=1.7.2`

Sorry. I had the incorrect version number. I edited the original post to fix that.

Follow the instructions on the last line and you should be good to go On Fri, 30 Apr 2021 at 12:54 pm, ramnageena11 ***@***.***> wrote: > Hey andersgs, > I...

Can you send the result of conda list? I suspect an older version of bioperl is installed. Make sure you have version 1.7.2 installed.

Dependency install can be problematic. Not isolated to conda. Can you try to upgrade?

Thank you @ole-tange! And thank you for developing parallel!!

Yes. But, not mutually exclusive. Because Nullarbor generates a makefile when you run it --- unless you run it from within the container, it will search for the tools in...

This is a known bug that we are in process of fixing. In the mean time, we do recommend downgrading. Thank you.

Thank @maxbranger. @iolanda-IZSAM there are two other options you may want to be aware of, and wish to experiment with: https://github.com/tseemann/snippy#the-variant-caller Keep in mind that Snippy does not account for...