Alistair Johnson
Alistair Johnson
The sklearn.externals.joblib module was deprecated in favor of a dependency on joblib - see Miscellaneous section in 0.21 changelog: https://scikit-learn.org/stable/whats_new/v0.21.html#changelog ) This PR removes sklearn.externals.joblib and uses the external joblib...
Originally raised on eicu-website. From @obadawi > We recently discovered that the ETL transforming raw eCM data into eRI data converts null date/time fields into "0" which will then appear...
We currently have a number of open issues at https://github.com/MIT-LCP/eicu-website/issues We should migrate/close these as appropriate, then fully delete the repository to avoid confusion.
New releases of eICU-CRD will be announced here. To keep up to date on the latest releases, click the 'subscribe' button to receive notifications.  Please do not use this...
There are a few cases of missing temperature `itemid` in the [vitalsign](https://github.com/MIT-LCP/mimic-code/blob/main/mimic-iv/concepts/measurement/vitalsign.sql) derived table - likely they should be added: * 226329 Blood Temperature CCO (C) * When an arctic...
The cardiac marker concept grabs troponin-T: https://github.com/MIT-LCP/mimic-code/blob/14b9f5f7c622f4535dd6da88969de3e2f2460904/mimic-iv/concepts/measurement/cardiac_marker.sql#L8 However almost every single value is `___` (due to the deidentification), so the derived table has all empty values. The `valuenum` column has...
This is from a re-run of csv2mysql from @pszolovits - looks to add more info in comments, modify data types modestly (e.g. unsigned int to int, and some small ints...
The MIMIC-III concepts in BigQuery are generated by the make-concepts.sh script ([static link](https://github.com/MIT-LCP/mimic-code/blob/10613e72b2faf5a449f2a241cca1bdc86b413b05/mimic-iii/concepts/make-concepts.sh)) The ones in PostgreSQL are generated by either postgres_make_concepts.sh ([static link](https://github.com/MIT-LCP/mimic-code/blob/10613e72b2faf5a449f2a241cca1bdc86b413b05/mimic-iii/concepts/postgres_make_concepts.sh)) or postgres_make_concepts_windows.bat ([static link](https://github.com/MIT-LCP/mimic-code/blob/10613e72b2faf5a449f2a241cca1bdc86b413b05/mimic-iii/concepts/postgres_make_concepts_windows.bat)). The latter...
1. if the code could not parse the sentence, it would return `None`, but should return `None, None` to be consistent 2. Using a `pathlib2` path for model_dir throws an...
We just launched a repo to host derived data from MIMIC. A static snapshot of the code is hosted here: https://physionet.org/physiotools/mimic-code/ A static snapshot of the data is hosted on...