Alistair Johnson
Alistair Johnson
Quick fix - passing an index object to columns causes an error (e.g. `t1 = tableone(df, columns=df.columns)`). Added a check if it's a pandas index data type since it's probably...
Maybe a bit niche, but ran into this issue with lineplot: if there is a column of all `np.nan`, then it is ignored, but if there is a column of...
Similar to other issues, copy-paste has failed here: * listed as procedureevents_mv a few times * columns are incorrect - it should have starttime and endtime, but listed with charttime...
The row counts are incorrect in the ICU module for MIMIC-IV. e.g. inputevents lists 7,643,978, but the details pane of the BigQuery table shows 9,460,658. The numbers listed are all...
The columns for the *inputevents* table are incorrect; * the order is incorrect * `cgid`, `comments_status`, `comments_title`, and `comments_date` are listed, but not in MIMIC-IV
We mostly agreed on how to store microbiology data, but there are some loose ends to tie up. ## Specimen Each microbiology culture should be associated with a specimen, and...
There is a bit of flexibility in how drug administrations could be stored in OMOP and this issue aims to document our discussion so far and allow us to decide...
OMOP philosophy seems to be have a `concept_id`, `_source_value`, and `_source_concept_id`. Looking at CONDITION_OCCURRENCE, we have `condition_status_source_value`, `condition_status_concept_id`, but no `condition_status_source_concept_id`. Should we add?
The ETL is currently duplicating rows because there are duplicate rows in one of the concept mappings: ```sql select c3.*, c.numobs from gcpt_prescriptions_ndcisnullzero_to_concept c3 inner join ( select label, count(*)...
We have hospital admission source of "** INFO NOT AVAILABLE **" and a discharge location of "OTHER FACILITY". For admission, the only decent match I found was `32199` - Information...