alienzj
alienzj
Fixed. https://github.com/matsen/pplacer/pull/373


It looks like this 141 bp sequence can not be identified from SRA microbe and fungi datasets.
So how to match the specific HMDB accession according to the result of NetID ?
Some clade name of Metaphlan4 profile like below: ``` s__Clostridia_unclassified_SGB14196 s__Clostridia_bacterium_UC5_1_1E11 s__Clostridiales_bacterium_CHKCI006 s__Clostridiales_bacterium_Marseille_P5551 s__Clostridia_unclassified_SGB4313 s__Clostridia_unclassified_SGB13999 s__Clostridia_unclassified_SGB13972 s__Clostridia_unclassified_SGB14297 s__Clostridiales_bacterium_KA00274 s__Clostridia_unclassified_SGB6317 s__Clostridia_unclassified_SGB14308 ```
I checked the `taxatab` variable generated by `mp_import_metaphlan` inside. Seems the details showed there is a issue when parse Metaphlan4 profile:  Is there a way to solve this issue...
[metaphlan4.merged.abundance.profile.all.tsv.gz](https://github.com/YuLab-SMU/MicrobiotaProcess/files/11262341/metaphlan4.merged.abundance.profile.all.tsv.gz) I see, you can use attached one.
 The input `Abundance` is already relative abundance, why it need so large memory when calculate `RelAbundanceBySample`?
Dear @xiangpin, why doesn't `mpse` contain metadata information?