alienzj

Results 117 comments of alienzj

Fixed. https://github.com/matsen/pplacer/pull/373

![image](https://user-images.githubusercontent.com/8847420/229406406-99689ea9-adf6-47c8-a372-3decc089ecc7.png)

![image](https://user-images.githubusercontent.com/8847420/229407629-7491c602-bb28-4a72-81d5-aae5e7f529cd.png)

It looks like this 141 bp sequence can not be identified from SRA microbe and fungi datasets.

So how to match the specific HMDB accession according to the result of NetID ?

Some clade name of Metaphlan4 profile like below: ``` s__Clostridia_unclassified_SGB14196 s__Clostridia_bacterium_UC5_1_1E11 s__Clostridiales_bacterium_CHKCI006 s__Clostridiales_bacterium_Marseille_P5551 s__Clostridia_unclassified_SGB4313 s__Clostridia_unclassified_SGB13999 s__Clostridia_unclassified_SGB13972 s__Clostridia_unclassified_SGB14297 s__Clostridiales_bacterium_KA00274 s__Clostridia_unclassified_SGB6317 s__Clostridia_unclassified_SGB14308 ```

I checked the `taxatab` variable generated by `mp_import_metaphlan` inside. Seems the details showed there is a issue when parse Metaphlan4 profile: ![image](https://user-images.githubusercontent.com/8847420/231652501-49579794-0f8f-4779-b5b6-0fa346637ff4.png) Is there a way to solve this issue...

[metaphlan4.merged.abundance.profile.all.tsv.gz](https://github.com/YuLab-SMU/MicrobiotaProcess/files/11262341/metaphlan4.merged.abundance.profile.all.tsv.gz) I see, you can use attached one.

![image](https://github.com/YuLab-SMU/MicrobiotaProcess/assets/8847420/553f53f0-8829-4651-94a2-9e95d462e113) The input `Abundance` is already relative abundance, why it need so large memory when calculate `RelAbundanceBySample`?

Dear @xiangpin, why doesn't `mpse` contain metadata information?