alienzj
alienzj
I also have a another question, If I do twice `mp_diff_analysis`, and got two tree visualization, can be merge two tree into one tree ? If we have many samples,...
@xiangpin Hi, Shuangbin, thanks for your reply. I was really amazed by the streaming operation in MPSE, you help me a lot, thanks so much! I used `fc.method="compare_median"` and found...
@xiangpin Hi, Shuangbin, thanks for your answer. `The method of `LEfSe` might have a problem`: You means `MPSE` or `LEfSe` python package ?
OK, I choose to use `MPSE`, and also recommand it to my friends and collegues. Thanks so much!
Running: ```r tree_ogd_ce_t2$data %>% tidyr::unnest(AbundanceBySample) %>% select(label, nodeClass, Sample, group, RelAbundanceBySample) ``` Got: ``` # A tibble: 1,155 × 5 label nodeClass Sample group RelAbundanceByS… 1 s__Microbacterium_ginsengisoli OTU CLN-control-A Cont…...
Thanks so much ~ I will try `mp_plot_diff_res`. [tree_diff_mpse_ogd_control_empty.zip](https://github.com/YuLab-SMU/MicrobiotaProcess/files/7606047/tree_diff_mpse_ogd_control_empty.zip) You can use this file to debug.
That's great ! Thanks so much !
@xiangpin Dear xiangpin, could you please show the R session info to me when run the above code ? I found I can't reproduce the results of above code, there...
Thanks so much ! I updated `ggtreeExtra`, now it work.
Thanks a lot for your reply. I am learning Haskell. :)