Alex Pickering

Thank you for your response! I'll let you know if I do try to adapt your algorithm to include the distance matrix. Cheers,

Hi @deevdevil88, The challenges I faced with this issue made me switch over to `kallisto` which has some nice advantages as far as speed. I didn't see any obvious affects...

Just confirming that I was able to solve the same issue by adding `export LD_LIBRARY_PATH=/usr/lib/jvm/default-java/jre/lib/amd64/server` (directory with `libjvm.so` - can differ) to `/etc/apache2/envvars`. Another issue arose however from the same...

Is there any progress on this @gaborcsardi? I'd be happy to try to put together a PR if you can give some direction on how to go from the `renv`...

I was able to reduce our GitHub Actions build times from ~4.5 hrs to ~1hr in [this repo](https://github.com/hms-dbmi-cellenics/pipeline/tree/master/pipeline-runner). I couldn't get `renv::restore()` with `options(renv.config.pak.enabled = TRUE)` to work. `pak`'s usage...

> @alexvpickering One hour still seems pretty long, have you tried to use binary Linux packages from https://packagemanager.posit.co? Not tried yet. Locally the restore takes ~30 mins (more cores than...

Glad to hear its useful to you @afonsoguerra! This isn't currently a priority but I will think about it since you ask. In the meantime I would suggest either converting...

@afonsoguerra - sorry for the large delay. This should work now with either `Assay5` or `Assay` but let me know if you encounter any other issues