Alex Pickering

Question: benefit to using distance matrix?

2

Hi I noticed that `to_graph` in `dataset/get_qm8_data.py` doesn't use the 7th channel (distance matrix). I presume this is related to this line in your paper: > Since some models cannot...

The slider range isn't set by `searchCols` when `server=TRUE`. **Example**: ```R library(shiny) library(DT) dt

Feature request: support for s3 select

2

Would be great to see support for the new [s3 select](https://aws.amazon.com/blogs/aws/s3-glacier-select/). Thank you for the great software!

Is it possible to specify sample?

1

Thanks for the great package, Is it possible to account for sample identity in comparison analyses? Results seem to be steered by individual samples. For example this is the setup...

To reproduce, get rApache to run a script with the following: ```R mailR::send.mail( from = '', to = "", replyTo = "", subject = "Subject of the email", body =...

error in more$solution $ operator is invalid for atomic vectors

1

here is the full output: ```bash [12/Jun/2020 16:16:54] INFO - Xie Chao's HLA typing algorithm [12/Jun/2020 16:16:54] INFO - Sample_id: 09KTG_TGACCA Input file: ./results/mapped_reads/09KTG_TGACCA.bam typer.sh parameters: DELETE=false FULL=false Extracting reads...

- updates most R packages - init Seurat v5 support (closes #205)

Error converting Assay5 to Assay

2

Following the vignette, I keep getting error `Error in .subset2(x, i, exact = exact) : subscript out of bounds`: ```R library(Seurat) library(SeuratData) options(Seurat.object.assay.version = "v5") pbmc3k ```