Alan Hoyle

allow use of BED file for manifest

6

We're using custom targeted sequencing from a different company than Illumina. They don't provide us with a Nextera manifest formatted file, but I was able to get things to run...

Documentation for how to run the generator on our own infrastructure.

1

One of the researchers here asked about your BioJupies service and was wondering if it would be possible to run the notebook generator software supported by our own local services...

This corrects a broken link, adds a couple of other links, and adds some formatting to the readme.

Per email discussion, this is a Dockerfile that would build whatever the latest ABRA checked out of github.

The Markdown formatting in the README.md did not render some of the example command lines correctly.

Add CMD to Dockerfile so a default run displays the --help

2

- [x] This comment contains a description of changes (with reason) This change adds a default multiqc command to the Docker image. If the current docker image is run without...

Group reorganization: have confirmation, undo or warnings for drag&drop actions

2

* Wavebox Version: 10.118.5.2 * Operating System & Version: macOS 14.0 ### Bug/Feature description It's nice that one can reorganize the icons and groups in the side bar, but sometimes...

Feature: Copy Clean Link in context menu

1

* Wavebox Version: 10.117.21.2 * Operating System & Version: any ### Bug/Feature description Some browsers (e.g. Brave) have a "copy clean link" feature in the right-click menu. What this does...

This change adds a table of contents section to the bottom of every documentation page. It also fixes an unclosed `````` in one of the pages, and changes the contents...