Alan Hoyle

**Is the bug primarily related to salmon (bulk mode) or alevin (single-cell mode)?** Only tested in bulk mode **Describe the bug** If the annotation GTF file exists but the running...

Binding /dev to a container causes all accesses to /dev/* to get permission denied

5

If you add `-B /dev` to an `apptainer run` or `apptainer exec` command causes all things in /dev to no longer be available. `apptainer run docker://ubuntu:latest` works fine, but `apptainer...

Staging /dev causes apptainer/singularity processes to fail.

2

## Bug report ### Expected behavior and actual behavior Run a process that takes a file parameter as one of the inputs, set the file to be `/dev/null`, and run...

Feature Request: rclone support

1

[rclone](https://rclone.org/) supports many possible targets. Supporting it would accomplish support for almost anything that someone would want. I see it supports Dropbox, iCloud Drive, Google Drive, Microsoft OneDrive, CIFS, SFTP,...

feature request: RO root OS with overlayfs

2

Given that one of these appliances might be unplugged randomly, it would make sense to harden the RPi to avoid corrupting the root file system. A way to do that...