methylKit

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Error: ``` library(methylKit) ?getCorrelation data("methylKit") mdb

alexg9010

Unite function output is methylBase object with 1 row

1

Hello ! I am using unite() function to merge samples but it produced a methylBase object with 1 row, i don't understand where is the problem?! ` library("methylKit") file.list =...

fafaris39

alexg9010

``` > getSampleID(methylRawList.obj) getSampleID(methylRawList.obj)

alexg9010

Issue with Unite function and large dataset

27

Hi Akalin, I'm getting the following error when uniting my sample with the following code: ``` meth5,000,000 and less then 10,000,000; this returned the error: ``` ## Error in vecseq(f...

AJEinstein

The recent conversation on #63 shows that we need to improve verification of file types/contents before processing them. It is good that we are able to read compressed files, but...

alexg9010

segfault when uniting large methylrawlistDB object

2

Hi, I am having an issue where a my analysis is proceeding normally, then a crash happens which terminates the process. I am working with a large methylation dataset from...

ethan-shealy

uniting methylRawDB objects with regional resolution and setting destrand=TRUE deletes the original objects

1

https://github.com/al2na/methylKit/blob/4735b6fca820c8bda1f84b03e12d19bada2df1fc/R/methylDBFunctions.R#L747

alexg9010

regioncounts lost some regions

1

Hi, I took use of `regioncounts` to calculate methylation degree at some regions: > seqnames ranges strand > > 11 V-P1 194583-194983 + > 12 V-P1 194587-194987 + > 97...

leon945945

Hello, I'm aware your tool is focused on BiSulfite-Seq data and as such is focused on 5mC/5hmC methylation in CpG contexts. However I was wondering if there is any interest...

Ge0rges