methylKit
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GetCorrelation for methylbaseDB does not accept methods other than 'pearson'
Error:
library(methylKit)
?getCorrelation
data("methylKit")
mdb <- makeMethylDB(methylBase.obj)
lapply(c("pearson", "kendall", "spearman"), function(x) getCorrelation(methylBase.obj, method = x))
lapply(c("pearson", "kendall", "spearman"), function(x) getCorrelation(mdb, method = x))
Fix at https://github.com/al2na/methylKit/blob/4735b6fca820c8bda1f84b03e12d19bada2df1fc/R/methylDBFunctions.R#L885-L886:
setMethod("getCorrelation", "methylBaseDB",
function(object,method = c("pearson", "kendall", "spearman"),plot,nrow=2e6){