akmorrow13

Hi @antonkulaga! Can you paste the output when you run ./bin/mango-submit -h? It should look something like this:

That is correct. you can click on available chromosomes to view the data.

Looks awesome @jpdna ! Feel free to make a PR so we can comment. If you want to wait until all the endpoints are added though, that is fine too.

Yes, this should be documented. Do you know the versions you ran that were failing?

I believe this is an issue when trying to calculate and render all point mutations. This should be fixed once convolution is in. If not, we will have to look...

@fnothaft Great, I've been meaning to address most of these. We can talk specifically about points 1 (java IO) and 4 (CRAM support) tomorrow or after Tuesday.

Hi @rstrahan ! I would like to know if this is a data, data access or javascript issue. Could you: - post any terminal output/errors - look at the spark...

Ah yes, this seems to be an bug from updating ADAM version. I have made an issue and will address it in the next couple days https://github.com/bigdatagenomics/mango/issues/312 In terms of...

hi @rstrahan I believe I fixed these issues in https://github.com/bigdatagenomics/mango/pull/313 (except for the label truncation issue) Let me know if these updates fix your issue!

@rstrahan here are some (scattered) answers: > reads: converted 1000Genomes BAM file to ADAM > I noted your latest example files uses SAM rather than BAM for reads input -...