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Error! The number of reads in the fastqs is not the same as the number of reads reported in the stats (0)

1

Hello, I'm trying to run the Juicer pipeline following the CPU example and run sucessfully, however I got the below error message of data downloaded from GEO database. ************************************************************************ ***!...

carrie1s

Hi, I want to know how much storage space I need to allocate for juicer to run. My genome is about 1G. Looking forward to your reply. Best wishes, Xin

Xoey0314

**Are you sure this is a bug?** This is a bug in the wiki documentation not in the code. **Describe the bug** Get a permission denied error when attempting to...

jprorama

Failure during chimera handling of ...

4

Hi, I am getting this error while running juicer pipeline on slurm at the mergesort step: ***! Failure during chimera handling of /gpfs/gibbs/pi/ycga/mane/at2253/wangSung/20221019_HiC/AS-FB_HiC//splits/AS-FB-HiC_AHV5HHDSX3_L001_001.fastq.gz Based on previous error reports, I have...

antarikshtyagi

**Desktop (please complete the following information):** - OS: Ubuntu 22.04 Add any other context about the problem here. Hello, I am a researcher who wants to start HiC analysis. I...

hwamu

I am trying to install juicer from`https://github.com/aidenlab/juicer/wiki/Installation#dependencies`. However wget fails to download file at `wget https://hicfiles.tc4ga.com/public/juicer/juicer_tools.1.9.9_jcuda.0.8.jar`. Here is the complete error `wget https://hicfiles.tc4ga.com/public/juicer/juicer_tools.1.9.9_jcuda.0.8.jar --2023-09-15 20:39:21-- https://hicfiles.tc4ga.com/public/juicer/juicer_tools.1.9.9_jcuda.0.8.jar Resolving hicfiles.tc4ga.com (hicfiles.tc4ga.com)... 104.21.24.187,...

ratheraarif

Hi Juicebox team, java -Xmx32G -jar juicer_tools.2.20.00.jar post -o output abdullah_manual_out_JBAT.review.assembly out_JBAT.liftover.agp yahs.out_scaffolds_final.fa WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance. WARN [2023-09-07T20:51:58,793] [Globals.java:138] [main] Development mode is enabled...

ABDULLAHGUJJAR

sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.

1

Hello, When I operated juicer_tools pre in my Ubuntu server, I got this warning message. Do you have any comments? Thanks. $ java -Xmx2g -jar ../juicer_tools.2.20.00.jar pre ./GSM1551550_HIC001_merged_nodups.txt.gz ./juicertools_output.hic hg19...

MovmntR

Calculating norms for zoom BP_100000java.lang.ArrayIndexOutOfBoundsException: 1296

1

 I'm having trouble converting pairs to hic files, this is the content of my pair file, when I use the following command `java -Xmx2g -jar juicer_tools.1.9.9_jcuda.0.8.jar pre ./test.pair test.hic...

maize821

Is it possible to calculate interchromosomal interactions using juicer?

1

Is it possible to calculate interchromosomal interactions using juicer?

rahulk87