SCope
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aertslab
Fast visualization tool for large-scale and high dimensional single-cell data
> Make SCope handle new type of .loom files based on genomic regions instead of genes. > Such data can be generated by our method, cisTopic for instance. > The...
Incorporate the RSS score of regulons in order to find out which regulons are specific for a certain cluster.
Allow plotting values coming from other layers within the loom file.
There is a hard coded convention for the regulon names which can cause the right pane in the regulon tab not to be displayed. The regulon genes and the regulon...
Would it be possible to interactively select a threshold for which we want the gene to be considered not expressed? For example, to show in grey/black all the cells that...
For now multi-dataset comparison between loom files without meta data is disabled. This should be enabled.
When comparing 2 datasets in Compare tab (multi-dataset), the cell IDs retrieved from a lasso selection on the left viewer are correct however a lasso selection on the right viewer...
Could be a lot of work to implement, but could make exploring data very cool https://academic.oup.com/gigascience/article/7/7/giy083/5052205 https://github.com/lazappi/clustree