Adam Diehl

Current behavior is to produce a plot with the number of samples equal to the number of labels provided, presumably matched by index such that samples may be labelled incorrectly...

Can't change the libdeflate install_name on MacOS "because larger updated load commands do not fit"

3

Compilaltion on MacOS Sonoma 14.2 fails with the following error: error: /Library/Developer/CommandLineTools/usr/bin/install_name_tool: changing install names or rpaths can't be redone for: lib/libdeflate.dylib (for architecture arm64) because larger updated load commands...

HPRC Draft Pangenome Graphs fail to load

1

First off, the only way I have found that actually works to incorporate custom data is to explicitly add records to config.json and recompile the app: no "custom data (mounted...

...or does this require embedded haplotypes?

How to identify merged contigs in output

2

I am attempting to use quickmerge in an attempt to merge contigs from a long-read assembly into chromosome-length scaffolds using the hg38 reference genome. Please see the example command below:...

I am not sure whether this is a bug or a feature, but in examining output of a trial of ragtag patch, I noticed that ragtag.patch.fasta contains the same number...