ragtag.patch.fasta lacks unplaced contigs?

[adadiehl]

I am not sure whether this is a bug or a feature, but in examining output of a trial of ragtag patch, I noticed that ragtag.patch.fasta contains the same number of sequences as the reference genome, suggesting that unplaced contigs from the query genome were not included in the output. If this is a feature, it would be useful to be able to override this behavior and include unplaced contigs in the output.