npdtools
npdtools copied to clipboard
ablab
Natural Product Discovery tools -- a toolkit containing various pipelines for in silico analysis of natural product mass spectrometry data
I am posting an issue to keep track of this. People in the lab wants to use it, but the current workflow (RIPPQuest) is outdated https://gnps.ucsd.edu/ProteoSAFe/index.jsp?params=%7B%22workflow%22:%22RIPPQUEST%22%7D See https://github.com/CCMS-UCSD/GNPS_Workflows/issues/228
## Description When providing metaMiner with an un-annotated nucleotide FASTA file that has more than one DNA sequences, transeq is run to six-frame translate it prior to running hmmsearch. However,...
Hi @alexeigurevich Is it possible to get predicted fragmentation spectra for the compound that was used to do spectrum matching? I am thinking of two possible ways but still couldn't...
