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Published 20 hours ago • verified publisher icon ablab

[MetaMiner] Adding the workflow to GNPS and the documentation

Open lfnothias opened this issue 5 years ago • 1 comments

I am posting an issue to keep track of this. People in the lab wants to use it, but the current workflow (RIPPQuest) is outdated https://gnps.ucsd.edu/ProteoSAFe/index.jsp?params=%7B%22workflow%22:%22RIPPQUEST%22%7D

See https://github.com/CCMS-UCSD/GNPS_Workflows/issues/228

lfnothias avatar Oct 23 '19 21:10 lfnothias

MetaMiner workflow on GNPS is not actually working. The same from command line indeed. The pipeline is not able to process .gbk and while dealing with .fasta files it encounters a problem in ORF recognition

andrekind17 avatar Jan 29 '24 10:01 andrekind17