Lukas Heumos
Lukas Heumos
### Description of feature - [ ] Investigate the complexity of holoviz & discuss with @eroell and @Zethson - [ ] Agree on a final plotting library with @eroell and...
### Description of feature There are several time series issues here already and this is yet another one. I'll try to consolidate them later. I'll edit this issue when I'm...
### Description of feature Our tutorials suffer from at least the following issues: 1. They are too long and verbose. 2. They do not suggest best practices or which of...
This should be possible, right? I think we should consider auto-labeling issues with Types and leaving it up to the user to add labels.
You merged the build and test workflows into a single one. Is there a reason for that which I'm not aware of? Else, I'd like to request to adhere to...
Either numpy or google. The template expects numpy by default but some of us are using google. This is Google https://github.com/saezlab/liana-py/blob/main/src/liana/_logging.py#L7 but most of your other code is numpy.
This is a bit more work and not super urgent but I'm writing it nevertheless: 1. Please consider structuring your tests so that they're in modules (folders) that correspond to...
Related to https://github.com/saezlab/liana-py/issues/90 Please consider testing all vignettes in CI like https://github.com/scverse/pertpy/blob/main/.github/workflows/test_tutorials.yml (also a bit work in progress for me at the moment). This ensures that 1. The vignettes always...
Like https://pertpy.readthedocs.io/en/stable/api/tools/pertpy.tools.Augur.html#pertpy.tools.Augur.plot_important_features Do you know the Pandas docs? Most people just scroll to the examples and learn from those.