Lukas Heumos
Lukas Heumos
We are currently only distributing mlf-core to PyPI. I would be very happy if we could also make it available on Conda(-forge?). My initial attempts were not that successful. Will...
`mlf-core projects parameters` -> shows all possible parameters of a given project nicely formatted. The parameters are in the MLproject file. `mlf-core projects run` -> calls mlflow run, but adds...
The new 1.12 release also brings SHAP explanations with it. It would be awesome if all templates featured it. Recommended reading: https://databricks.com/blog/2020/11/13/mlflow-1-12-features-extended-pytorch-integration.html
At the moment we have Flake8 running in the linting workflow. I would suggest to 1. Add pre-commit to the CI for all templates and remove flake8 from the linting...
``` .. image:: https://user-images.githubusercontent.com/21954664/84388841-84b4cc80-abf5-11ea-83f3-b8ce8de36e25.png :target: https://mlf-core.com :alt: mlf-core logo | ``` Could be added at the top of the README of all templates. Not quite sure actually whether this is...
Keep it in mind before mindlessly updating https://github.com/mlflow/mlflow/pull/4118
### Discussed in https://github.com/theislab/single-cell-best-practices/discussions/268 Originally posted by **ComplexNeoDa** April 17, 2024 when i run ro.globalenv["adata"] = adata, reach OverflowError: does not fit '32-bit int' AnnData object with n_obs × n_vars...
**Donor inference** - [Vireo](https://genomebiology.biomedcentral.com/articles/10.1186/s13059-019-1865-2) - [Souporcell](https://www.nature.com/articles/s41592-020-0820-1) - [scsplit](https://genomebiology.biomedcentral.com/articles/10.1186/s13059-019-1852-7) - [Genetic demultiplexing of pooled single-cell RNA-sequencing samples in cancer facilitates effective experimental design](https://www.biorxiv.org/content/10.1101/2020.11.06.371963v3) + code: https://github.com/lmweber/snp-dmx-cancer - Can mention demuxlet, but...
https://github.com/rossjrw/pr-preview-action as long as the deploy-pages action doesn't support it yet. Might consolidate these two eventually and publish then on tag or something