Lukas Heumos

Results 191 issues of Lukas Heumos

My configuration: ``` [rstcheck] bears = RSTcheckBear files = **.rst ``` The terminal is simply stuck at this stage and does not respond to anything. I've repeated it multiple times.

Hey, I can't seem to find muon on any conda channel. Would suggest to add muon to conda-forge. Cheers

enhancement

Hey, ``` import diffxpy.api as de de_w_test = de.test.wald( data=leukocytes_only_raw.X, formula_loc="~ 1 + condition", factor_loc_totest="condition", gene_names=leukocytes_only_raw.var_names, sample_description=leukocytes_only_raw.obs, ) ``` results in ``` ╭──────────────────────────── Traceback (most recent call last) ────────────────────────────╮ │...

``` import pygit2 from github import Github github_username = "user" github_password = "password" github_email = "email" # login to github and authenticated_github_user = Github(github_username, github_password) user = authenticated_github_user.get_user() is_org: bool...

support

We currently lack issue templates for AnnData. Would be great to have the new issue templates that @grst has been working on here. Also think that it's a great idea...

enhancement

Hi, for ehrapy we need the ability to move values from X to obs/var/obsm/varm and the other way around. Quoting myself: > Would be very useful to have a method...

enhancement
help wanted 🙏
topic: combining
topic: indexing

### Description of feature Had discussion on slack with @ewels and Claus Hultschig whose Github Account I do not know. Might not hurt to add some GPU labels that people...

template

The link of your CrimesApp specified in the README is not working.

``` ignore: # Official actions have moving tags like v1 - dependency-name: "pip/*" update-types: ["version-update:semver-patch"] ``` This is actually possible!

enhancement

* myst-parser * Ignore the generated API docs with the gitignore See ehrapy and scVI tools

enhancement