Lukas Heumos
Lukas Heumos
On which OS are you and are you in a fresh venv? Jun 20, 2023 5:10:00 PM Bo Sun ***@***.***>: > > Thanks, > > well one example is installing...
The error that you're getting actually runs when trying to import scanpy and in turn numba. centos7 is really old.
@Lilly-May @wxicu this is for later. Please ignore it for now - you have other things to do that are currently more important.
Hi, "implement edgeR approach" this is actually a very important use-case for batchGLM. We are planning to use batchGLM/diffxpy for a pure Python implementation of MILO and we promised to...
Amazing @picciama > Let me know if you have any specific dataset in mind that's well suited for testing the batchGLM procedure. I'll create a jupyter notebook in the batchglm_tutorials...
See https://github.com/scverse/rapids_singlecell/issues/44 for the clustering issue
@brianpenghe solo is here at least: https://docs.scvi-tools.org/en/stable/api/reference/scvi.external.SOLO.html Don't think hashsolo is anywhere yet though
Yeah, I can see us contributing this back after the ehrapy manuscipt is out. I'll revisit this in ~2 months.
@ivirshup is this PR still one approach that you'd follow or did it change since Pandas 2.0 got released? Datetime support would still be great for ehrapy - especially for...