Lukas Heumos
Lukas Heumos
Excellent, thank you very much. So would the `de_analysis` have an additional parameter called "method" to which this is passed to? Or would you have separate public functions per test?
What do we do with https://scanpy.readthedocs.io/en/stable/generated/scanpy.pl.rank_genes_groups.html#scanpy.pl.rank_genes_groups and all of its siblings? Think it expects the old format?
> tbh, I'm not a big fan of how scanpy currently stores the DE results. So I wouldn't mind if the scanpy functions were rewritten. But that would be either...
Yeah, that's a lovely idea. Do you think that we should expose another "add_de_res_for_pertpy" function that does the same thing but this time load the DE results into `adata.varm`? We...
Could you please paste your lightning + pytorch versions?
Currently checking with the latest versions.... pytorch-lightning-2.2.1 torch-2.2.1
Can't reproduce this issue on my Linux system with the latest versions.
Yes, please mark it ready for review. We can also ask other people from #dream-team to narrow down what kind of Mac issue it is, but I doubt that we...
How are your combinations of drugs stored?
Hi, 1. Yes. It's on our TODO list. Don't expect it anytime soon though. 2. What installation issues are you running into? Thanks