Cassiopeia

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Hi Matt, here's what I have for the STDR wrap-around currently. It's not thoroughly documented, so I'll work on that.

richardyz98

I migrated my branch length estimation code here, under `cassiopeia/tools`. This PR should be see as a big draft to get discussions started around APIs. For example, note that my...

sprillo

Hello! I encountered the following error > joblib.externals.loky.process_executor.TerminatedWorkerError: A worker process managed by the executor was unexpectedly terminated. This could be caused by a segmentation fault while calling the function...

peipp410

@mattjones315 if `cas.tools.fitness_estimator.LBIJungle()` is part of the public API it should be listed on readthedocs.

colganwi

v4 chemistry

2

Hi, I would like to run Cassiopia preprocessing on a 10X v4 chemistry library. Based on my understanding of your code, and v4 vs. v3 library structure, it seems that...

diazlab

How to write to a newick tree with root?

1

Currently, using `cas_tree.get_newick()` I get a tree that, when read into R as a phylo object, is unrooted (example below). Is there a way to add a root in the...

teng-gao