Ying Chen

icon location Bioinformatician at VGL at Rockefeller University; Genome assembly and annotation; Phylogenomics; Conservation genomics

Results 5 comments of Ying Chen

how many reads were polyG trimmed?

I am also wondering this.

Using Nucleotide vs Amino Acid fastas as input

I have a question relevant to this topic. I try to find orthologs across multiple chromosome-level reference genomes (downloaded from NCBI). Shall I use the reference genome as input with...

drawKaryotype trouble

Hello Alex, Is there a way to manually select the color? For example, Fig. 1b primates in the paper has mostly grey but some segments in purple. Thanks! Ying

Error 137?

Indeed it looks like it used up all the memory. Do you know how much memory physlr needs for a 4Gb genome? Thanks! ``` Command terminated by signal 9 Command...

How can I include the contig from the mitochondrial genome?

It seems that `--mito-pass-thru ` worked.