How can I include the contig from the mitochondrial genome?

[Antonio-Sanpedro]

During the train/predict stage, I removed the mitochondrial contig. Now, I would like to reintegrate it for submission. I understand that the --mito-pass-thru option serves this purpose. Could someone please indicate the correct syntax of the argument?

[YingChen94]

It seems that --mito-pass-thru <fasta file of the mitochondrial genome> worked.