Agora icon indicating copy to clipboard operation
Agora copied to clipboard

Published 20 hours ago • verified publisher icon DyogenIBENS

drawKaryotype trouble

Open Alchimic007 opened this issue 9 months ago • 1 comments

Hello, Firstly, thank you for such great software as AGORA. I am really sorry to disturb you, but I have met issues in reconstructed blocks visualization with misc.compareGenomes in recent tests. I have tried to visualize ancestor on human chromosomes without filtering by min size of the block (-minChrSize) and got karyograms where some block were painted black. I just want to know what black color means because in visualization of reference chromosomes there was no black color. I will attach my results to this message. Please inform me if you need any more info Thank you.

Kind regards, Maksym

AGORA_last_res1.zip AGORA_last_res2.zip

Alchimic007 avatar Apr 30 '24 15:04 Alchimic007