Lilin Yin comments

Results 195 comments of


                                            Lilin Yin

Parallelization

Thank you for the question. The parallelization is only available when you have linked OpenBLAS or Intel MKL with R, otherwise it will run on one core only.

Format of Genomic Data when multiple observations of same ID

Thank you for using hibayes package. Sorry that hibayes can not handle repeative records traits. I recommend using mixed-effect model (which is available in lme4 package) to get the BLUP...

PVE or GVE of snp marker

Thank you for the question. In hibayes package, the heritability of a trait is derived from dividing the genetic variance by the sum of genetic variance, residual variance, and all...

I have only one-layer of circle plot

That is because only one trait existed in your data, if you want to get more than one layers, please add more traits by columns in the data 'entire_assoc'.

Error in CMplot(): 'amplify' is FALSE.

It sounds quite strange, did you try to update the package to the latest version?

Error in CMplot(): 'amplify' is FALSE.

Thank you for the detailed feedback. Question 1. I have tried the similar script to run CMplot using the tutorial data, it works fine. I guess there may be some...

Error in plot.new()

This issue may attribute to the illegal or unqualified file name, please try to change a new name.

Chromosome order in marker density plot

Thank you for using CMplot. You can name the chromosomes of your data into digital values with the desired order, then assign a vector containing the correct names of chromosomes...

Can CMplot break the Yaxis?

Sorry that it's currently not available to break the axis for CMplot.

Should extract overlap or union snps when different traits with different position

If you would like to plot a single track Manhattan plot, it's not required to extract the overlapped or union SNPs for traits, just plot one by one with different...