Lilin Yin comments

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                                            Lilin Yin

Improved documentation

Hi Joseph, Thank you for the question. Sorry about that, I will add more descriptive details for some major parameters of KAML on the README page, before that, I would...

Error in as.vector(data) : no method for coercing this S4 class to a vector

Thanks for using hibayes. Please try ```pve

Error in as.vector(data) : no method for coercing this S4 class to a vector

If you are trying to do GWAS using Bayes model, please make sure that all the physical positions in the map information should be in digital values, any character is...

Could not generate *.geno.desc file

Thank you for trying KAML. This problem may occur over the following possible reasons: 1. Check your available hard drive space, because the error could be due to insufficient hard...

Problem running binary trait

How is the proportion of case and control at this trait? As KAML uses cross-validation to optimize model parameters, if the distribution of case and control is too extreme, there...

Problem running binary trait

@bigshrimp123 Thank for your feedback. Please try to change another seed by parameter 'theSeed', and also turn on the flag ```binary = TRUE```

Heritability (h2) estimation

Thanks, so is it possible to derive the estimated heritability from the returns?

Thining parameter

Hi @stefaniemuff, Thank you for trying hibayes package. In the latest version, i have added a new argument "thin" in the main function to control the collection step. And now...

Fitting dominance matrix instead of genomic matrix with also genotypes data?

Hi Vu, Thank you for trying KAML. The current version of KAML doesn't support dominance genetic effect, but we have a plan to achieve it in future. Best, Lilin

Bayes GWAS问题

你好，Bayes系列方法无法进行显著性检验，因为自由度不足，所以无法输出p值。可以用PIP或WPPA等指标代替，具体请参考教程页面。