Vladimir Shitov

Bug with illustration at the getting started page

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### Which documentation? Documentation website ### What needs to be documented? In the "How do I compute reductions or summary statistics" section of the [getting starting page](https://awkward-array.org/doc/main/getting-started/index.html) there is a...

Add compression support for concat_on_disk

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### Please describe your wishes and possible alternatives to achieve the desired result. Hi anndata team! Thanks for `anndata.experimental.concat_on_disk`. It came very in handy for me recently. It would be...

Filter warnings for better readability on /cellular_structure/integration.html ?

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There are a bunch of warnings, starting from scanpy `OldFormatWarning`, sometimes taking the entire scree in the integration tutorial. Maybe it makes sense to filter them out or to fix...

Remove TODOs from text

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I've noted some TODO notes in the text. This can look confusing for readers and is probably not the optimal way to store tasks. I would suggest moving it to...

**Describe the bug** There is a not critical error in the visualization on this page: https://www.sc-best-practices.org/preprocessing_visualization/quality_control.html The cluster of doublets is located **separately** from the singlet clusters. For UMAP/TSNE it...

Surprisingly structured academic network embedding

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Hi! While I have not used your package myself yet, I can see that it is getting some attention, specifically in the single-cell field. My congratulations :) Reading the documentation,...

The following code block can lead to an analysis problem: ``` gsea_results = ( pd.concat({"score": scores.T, "norm": norm.T, "pval": pvals.T}, axis=1) .droplevel(level=1, axis=1) .sort_values("pval") ) ``` Sometimes, when the effect...

Why making feature names unique instead of aggregation?

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### What kind of feature would you like to request? Additional function parameters / changed functionality / changed defaults? ### Please describe your wishes Hi scanpy team! I have a...