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Published 20 hours ago • verified publisher icon theislab

Wrong visualization of doublets cluster

Open VladimirShitov opened this issue 1 year ago • 0 comments

Describe the bug

There is a not critical error in the visualization on this page: https://www.sc-best-practices.org/preprocessing_visualization/quality_control.html

The cluster of doublets is located separately from the singlet clusters. For UMAP/TSNE it would be correct, but in PCA space, it would necessarily be located in between of these clusters. image

So, to easily make it correct, you can put UMAP on the axes labels. A bit more difficult fix would require changing the location of clusters

VladimirShitov avatar Oct 26 '23 09:10 VladimirShitov