Viktor Petukhov

> We probably should have used ragg as the default: I thought about it when these parameters were just introduced, but on my personal tests ragg quality was visibly bad,...

@samuel-marsh , I'd actually prefer having Cairo in Suggests, if it's done in a way that for users with Cairo installed we keep the default `dev="cairo"` and throw a meaningful...

Hi @Datseris , Thanks for the answer! > Noone says that you should absolutely have your data in the data folder. Where did you get this idea from? I mean,...

> I found the same problem using scanpy.pl.violin. It looks like the problem is in `sns.violinplot`, which [ignores kwargs](https://github.com/mwaskom/seaborn/blob/a69eb55f2d89b00e1d31b9c9ec29982fe0a187cb/seaborn/categorical.py#L2425), so it's impossible to make it rasterized.

I'm surprised that it's still an issue. I tried to replace `update!(p, i; showvalues = [(:test, 1.0)])` with ```julia update!(p, i) ProgressMeter.printover(p.output, "test: 1.0", p.color) ``` and indeed it's almost...

@sarahyk , @ccbvib , could you please provide the Baysor version here? It looks like one prior to 0.6.

Just found that it was implemented in [Palo](https://github.com/Winnie09/Palo)

Hi @anastasiiaNG and @ianphelps , I recently released [v0.3.0](https://github.com/kharchenkolab/cacoa/releases/tag/v0.3.0) together with an [updated walkthrough](http://pklab.med.harvard.edu/viktor/cacoa/walkthrough_short.html). It has a lot of changes and bug fixes, could you please try it? I tested...

Thanks, @anastasiiaNG ! Right, I also checked other functions and indeed there are errors in them. It's a bit of a pain to debug, as the part with `core_enrichment` comes...

@anastasiiaNG , I released [version 0.4.0](https://github.com/kharchenkolab/cacoa/releases/tag/v0.4.0), where all this should be fixed. Could you please check it?