Viktor Petukhov

@arunchakra , the provided binaries with name 'ubuntu' in them were compiled under ubuntu, but should be working for any Linux. Did you try them?

Hello Arun! That's a great question. I'd love to add parallelism, but at the moment I don't see a good option on how to do it. Previously I used Julia...

Thanks for all the kind words! > What do you think about a sliding window approach with overlap? I guess it could. Do you have any papers in mind on...

Thanks for the answers! I'll keep you updated here.

Can you try calling `MK.activate!(type = "png");` before the first plot is generated? The was some issues with Jupyter unable to display vector graphics, but I thought they fixed it...

In the current version, polygons only roughly correspond to cells, unfortunately. The task of drawing polygons based on a set of points is ill-defined, and all solutions that I checked...

Note for myself: after estimating KDE boundaries, need to replace my custom MST-based algorithm with [Marching squares](https://www.juliabloggers.com/implementing-marching-squares/), maybe from [Contour.jl](https://github.com/JuliaGeometry/Contour.jl)

I need to check it more, but the first guess is that you're using name `:cell` for prior segmentation, but it is also used for the output of Baysor, and...

Hello, Looks like the noise detection algorithm converges to assigning all molecules to the same class, and we don't process this case properly. It should be easy to fix technically,...

@BoomStarcuc , Julia updated their Manifest language in version 1.7, so when I recompiled it under the version, the support for lower versions was dropped. Sorry for that, but you...