Grandeur
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UPHL-BioNGS
UPHL's Reference Free Pipeline
Hello, I went back through an old cluster analysis to see what differences in interpretation would potentially arise in using with an older grandeur version that uses roary versus newer...
In version 3.0.230115, mash dist is used mostly to loosely flag samples for species-specific downstream tools. It could be more useful, and perhaps `mash screen` would help it be more...
Hello, The analysis completes successfully, no errors, but the snp-dists folder contains only the .txt output I've attached the snp matrix, heres my execution command, and some version info ```shell...
Hello Developer, Can you please provide at least a test.config with test fasta files to run this pipeline and understand the output ? Thank you.
bbduk and some other tools have changed how they go into multiqc, which will need to be addressed when updating multiqc