Torkel Loman
Torkel Loman
I already spent over an hour trying to figure out what was going on with the FAQ docs, so I raised the issue here for a starter. When I get...
`ODEProblem(osys, [], (0.0, 10.0), [])`
not sure, haven't gotten that far yet
If we do split the library I'd rather not rush it. I think it would be better to simply do the current breaking release asap, and then look at what...
I wrote a comment on it here: https://github.com/SciML/Catalyst.jl/pull/1056#issuecomment-2364056963, but I really need someone who knows more about Symobilcs to explain, as stuff like these just isn't documented at all.
All this should work (sans any function related its). Anything that is a valid equation normally should also work in the DSL. However, it is only in the case of...
I know that PySB (https://pysb.org/) have implemented Gillespie simulations on GPU (https://pysb.readthedocs.io/en/stable/modules/simulator.html), so it is definitely possible and there are some implementations one can have a look at already.
To what extent do these depend on initial conditions as well? It might make sense to tie them to e.g. ODEProblems?
I don't have a full idea, but and ODEProblem is a representation of a simulation (which contains the ReactionSystem. So it miggt make sense to carry out network analysis stuff...