Torkel Loman comments

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                                            Torkel Loman

Adding events macro to reaction network DSL

now works on master

Add check for whenever systems are time dependent, and use for steady state related functions

No, it is in the stability PR

Add check for whenever systems are time dependent, and use for steady state related functions

now works on master

Example for CLE where paths go negative

Currently, things can go negative: ```julia using Catalyst, StochasticDiffEq, Plots rn = @reaction_network begin (p,1.0), 0 X end sprob = SDEProblem(rn, [1.0], (0.0, 10.0), [1.0]) sol = solve(sprob, ImplicitEM()) plot(sol)...

Example for CLE where paths go negative

Would it be possible to make the default having nothing, but having a sqrt with a modified error message that explains what is going on and suggests a couple of...

Example for CLE where paths go negative

suspected so. Let's just keep it as it is and add options for alternative ways of dealing (or not dealing) with it

Conversion to non-linear system does not handle presence of differential equations:

It feels fairly obvious that if someone has made a mixed ReactionSystem/Differential equation ODE, that if they want to convert it to a NonlinearSystem they want those derivatives to be...

Conversion to non-linear system does not handle presence of differential equations:

yes, this is handled now

Local sensitivity analysis with SciMLSensitivity

Just confirming that a tutorial and some additional helper functions for the context of Catalyst is in the works.

Add documentation for chemistry related functionality

now works on master