Tom Kelly
Tested with published [SmartSeq3 data](https://www.nature.com/articles/s41587-020-0497-0) from [Array Express](https://www.nature.com/articles/s41587-020-0497-0). Compatible with latest versions for STAR (2.7.9a) and samtools (1.7). Samtools idxstats gives "*" special character as the column name for chromosome...
Add Universc
## Add the UniverSC single-cell pipeline Implements a completely open-source single-cell RNA pipeline that supports > 30 technologies. Uses publicly available docker container will all dependencies installed. [✔️](https://emojipedia.org/check-mark) **near completion**...
### Is there an existing module for this? - [X] I have searched for the existing module ### Is there an open PR for this? - [X] I have searched...
Migrates changes to 'data wrangling' to separate PR. This term seems to need more detailed discussion than the rest of the Japanese entries. As discussed in #303 with @baileythegreen the...
Defines the "[Help (Command)](https://en.wikipedia.org/wiki/Help_(command))" in both English and Japanese as ヘルプ(機能). ## Author: - @TomKellyGenetics ## Language: - English - Japanese ## Terms defined: - Help(Command) - ヘルプ(機能)
# Contribution of related terms for class and data type (English and Japanese) Sorry for a complicated PR but these are related terms so I think review together is appropriate....
As described [here](https://github.com/TomKellyGenetics/leiden/issues/7#issue-737443599) there are many classes for multiplex graphs. Currently only a list of igraph objects is supported. #7
Support for Bipartite graphs has been implemented: #5 Maximum community size is supported in regular and multiplexed graphs: #8 Currently the `max_comm_size` parameter is passed to internal functions for bipartite...
Weighted matrices and 'igraph' objects are supported in the 0.3.3 release but the default behaviour can differ. Checks will be made to ensure the same results from matrix or 'igraph'...
We've recently released an open-source tool to expand the functionality of Cell Ranger to apply to other technologies. We provide a Docker container on an open-source license (see #2) which...