Tobias Baril

Hi David, This is really strange, but does point to the issue being something to do with your specific conda configuration. As the issue is with RepeatMasker, I'm wondering whether...

Hi David, Any updates on this? Are you still experiencing any issues?

Closing due to lack of activity. Please open a new issue if further assistance is required.

Hi @ting-hsuan-chen! In this case it is likely that the OOM step prevented proper processing during the divergence calculations, where the annotations are read into memory to calculate kimura divergence....

Hi @ting-hsuan-chen, the library construction terminates after `TEstrainer`, where the _de novo_ libraries are generated. It will not run the final annotation and subsequent defragmentation. The idea with this subscript...

Hi! You can resume by following the comment. In the case of the log you posted it looks as though the job should have successfully completed. OOM in slurm can...

Hi @jeankeller, This is strange...are you happy to provide the log files from both runs for us to take a look at?

Hi Jean, It shouldn't be related to conda. It might be related to the divergence calculations that run several in parallel, although this shouldn't really cause any issues until we...

Okay so this looks like it could be linked to something in TEstrainer, or potentially a conda module. @jamesdgalbraith might be able to provide more information on specific sections of...

Hi @jeankeller, thanks for the update! It would be great to have the log file if possible. I’ve had a chat with @jamesdgalbraith and we think this might be related...