Tobias Baril
Tobias Baril
This definitely looks like a RAM issue. The run itself is finished but it looks like there isn't enough memory to successfully load and parse the file to generate the...
Closing for the moment, but feel free to reopen is more help is needed
Hi, The rate limiting step of Earl Grey is indeed RepeatModeler. Whilst the runtime can be improve with more cores and storage throughput, the biggest factor is the repeat content...
Hi! Any luck with recovering the RepeatModeler run? Do you require any more help or information?
Hi! @jamesdgalbraith should have some insight on whether a TEstrainer run can be recovered mid-round. From memory, this won't work from an automated Earl Grey perspective, but there might be...
Closing due to lack of activity - feel free to open a new issue if further assistance is required.
Hi, The change in unclassified sequences are most likely due to the way that RepeatMasker 4.1.6 has been configured. Which database partitions have you configured when installing RepeatMasker 4.1.6, and...
closing with lack of activity, feel free to reopen if needed
Hi, This is a strange case, as an invalid search term will kill a RepeatMasker job before commencing with analysing contigs. In this case, the final line of the log...
Hi! In addition to the above, there can sometimes be issues on systems where conda doesn't play nicely with other system installations of RepeatMasker. When the conda envrionment is active,...