Tobias Baril

@bioconda/core - The test is hanging due to system running out of space. Is it possible to stop the test? Can any help be given to get the latest RepeatMasker...

@aliciaaevans ah yes thanks for checking! We had similar issues with 4.1.5 but I'm not certain what the solution was - either it was just pushed even though it failed...

I have a version of RepeatMasker 4.1.6 configuring with the root partition in my personal conda channel: https://anaconda.org/toby_baril_bio/repeatmasker Remember that other partitions will need to be downloaded and then RepeatMasker...

Hi @mikecuoco, no luck with configuring with a single entry. I've had a good chat with the authors and they acknowledge the issues with the database configuration in Dfam3.8 and...

I haven't tested on OSX - I currently don't have a system with enough storage. I guess it is just a case of swapping a couple of bits to make...

I've narrowed this down to the fact that a ```gff-version 3``` line is found at the bottom of both *.rclabel.gff and *.rmerge.gff, which is causing an error when iterating through...

I have fixed this so far by removing the "gff-version 3" line at the bottom of rclabel.gff an rmerge.gff before the quantification is performed by editing https://github.com/niccw/repeatcraftp/blob/master/helper/rcStatm.py : ``` import...

As an extra note, it seems the recipe specifies a compatible version (numpy=1.23), but the environment consistently installs v1.20.3 for some reason...

A long time later but activating the env and then installing `numpy 1.23` manually with `pip` works! `pip install numpy==1.23` It will throw a warning that it could not successfully...

hmm, this is a weird one, but there have been some interesting edge cases with TEstrainer... @jamesdgalbraith might have some better insight...