Silas Kieser
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Silas Kieser
Your idea would be to define the path to the files Something like: config.yam ``` read_file_format: "QC/qc_reads/{sample}_{fraction}.fastq.gz" assembly_file_format: "Assembly/assemblies/{sample}.fasta.gz" ```
One could also use a tsv file in which we will specify the headers in a config file. Ideally using the https://snakemake.readthedocs.io/en/stable/snakefiles/configuration.html#configuring-scientific-experiments-via-peps
I also don't get any output #64