Silas Kieser

I managed to build a strain level kraken db with flextaxd. Kraken2 worked fine but then bracken didn't worked. Do we have to change something in the code?

I managed to get Kraken at the S1 level, thank you.

Could it be to the newer pandas datatypes. There are now nullable datatypes for string, float etc. with pandas.NA as missing values. I get many issues where data attempts to...

Continue discussion on https://github.com/metagenome-atlas/atlas/discussions/599

@AstrobioMike It is not implemented in the main workflow, but I would be happy to help to make it happen. As alternative for now I suggest MUFFIN.

#607 adds checkm2

this will be atlas v 3.14

Do you think it is possibl eto make a verion for osx?

Can you create a new for the latest version? we can then use them in conda.

I used drep 3.4 I think