Silas Kieser

Is createdb expected to use so much memory? Does compress input or output help something?

Maybe the writing to a disk took so long that the writing buffer exploded. My server has slow I/O. I solved it with an order version of mmseqs.

It’s mmseqs2=3 I know it’s old but it’s the one I started with.

Hello, is this still the preferred way to deal with this issue? From which version on is it implemented? I wonder if it has to do with a slow shared-filesystem?

@martin-steinegger Hello, is this still the preferred way to deal with this issue? From which version on is it implemented? I wonder if it has to do with a slow...

Is there a way to transfer the error and trace back to a log file? One can do that by mounting a whole logging structure but this is probably too...

The new version snakemake 7.15.1 fixes this issue. However now all the snakemake log from the executor is printed out. I wonder if there would be a better solution.

In addition the log is printed to the stdout but not in the main snakemake logfile

What do you try to do. I'm not shure if the assembly would work out of the box.

Do you find something in the cluster log file with the id `731789`. If you use my cluster wrapper it is in cluter_logs/ Anything else in the megahit log file....