Silas Kieser

Note to me: - [ ] dram_download would be part of `atlas download`

@omrctnr It worked for you isn't?

Hello, I would like to contribute [my workflow](https://github.com/SilasK/16S-dada2) to the snakemake-workflows. Could you add me to the team?

What should be the order of the channels according to the [bioconda-reccomended channel order](https://bioconda.github.io/#set-up-channels). Is this order correct in [deseq2 wirkflow](https://github.com/snakemake-workflows/rna-seq-star-deseq2/blob/c0a17404282f34fef2dbfa78ac9f7520ac970bff/envs/deseq2.yaml#L2) ``` channels: - bioconda - conda-forge - defaults ```...

Do you have any example with click integration and or circleci? I would like to know if [my project](https://github.com/metagenome-atlas/atlas) corresponds to the recommendations.

It seems there are now two templates the older one: https://github.com/snakemake-workflows/cookiecutter-snakemake-workflow referenced in the docs. the newer one: https://github.com/snakemake-workflows/snakemake-workflow-template

If I metal spades can assemble 16SrNA which then are binned into high-quality bins, would you trust these sequences? Obviously you could do som checks if it's only a contig...

Could you show me where in the code I would need to check if the input is a dict.

Change suggested by @cclienti

Do wonder what they are? Some paire-end reads loose their mate during quality filtering. They end up in the singletons. se. They are usually only a view. They are integrated...