Shrishtee kandoi

Error: No valid variant remaining

6

Dear Author, I am trying to run PRS but keep getting this error: `Error: No valid variant remaining ` PRSice 2.3.3 (2020-08-05) https://github.com/choishingwan/PRSice (C) 2016-2020 Shing Wan (Sam) Choi and...

Reference Panel download

8

Hi Minimac4 Team, I am currently facing challenges while attempting to run "minimac4" to impute my genotype files on our High-Performance Cluster. I have encountered a couple of issues that...

Possible SSL connectivity problems detected: How can I possibly fix this?

1

Error in curl::curl_fetch_memory(url, handle = handle) : SSL peer certificate or SSH remote key was not OK: [uswest.ensembl.org] SSL certificate problem: certificate has expired

Error in starting GUI Interface for Cellpose

1

Dear Developers, I am encountering an issue while attempting to utilize the GUI using the command-line command `python -m cellpose` I successfully installed both cellpose and cellpose[gui] using pip. However,...

bioinfo.sif is corrupted: wrong partition size

5

When I try to run the map_leafcutter_cluster_to_gene part for post-processing, it gives me this error.. ``` FATAL: could not open image /restricted/projectnb/casa/xqtl-pipeline/container/singularity/bioinfo.sif: SIF image /restricted/projectnb/casa/xqtl-pipeline/container/singularity/bioinfo.sif is corrupted: wrong partition size...

Script used to run psichomics: ``` sos run /restricted/projectnb/casa/xqtl-pipeline/pipeline/splicing_calling.ipynb psichomics \ --cwd /restricted/projectnb/casa/skandoi/ROSMAP_DLPFC/psichomics/ \ --samples /restricted/projectnb/casa/skandoi/ROSMAP_DLPFC/psichomics/psichomics_list \ --data-dir /restricted/projectnb/casa/skandoi/ROSMAP_DLPFC/rnaseqc_call/ \ --splicing_annotation /restricted/projectnb/casa/skandoi/ROSMAP_DLPFC/reference_data/hg38_suppa.rds \ --container /restricted/projectnb/casa/xqtl-pipeline/container/singularity/psichomics.sif \ --walltime 100h \ --numThreads...

Hi, I initialized a model using the following code: from cellpose import models model = models.Cellpose(gpu=False, model_type='cyto3') But I am getting an `HTTP Error 500: INTERNAL SERVER ERROR` message when...