Shrishtee kandoi

Hi Liguowang, I have the same error with "" in the "ALT" column, Do you suggest replacing the entire thing with either "." or "-"? or should I just remove...

I tried installing the latest version and it worked! Thanks :D

I just checked and did not find any NA values. Could you tell what the criteria for invalid p-values is? The range of p-values is: [1] 1.937e-110 1.000e+00

Is there a different way to upgrade to 2.3.5? I cloned the repository from Github only a few weeks and also did it again right now but it gives me...

Yes, I meant PRS sorry! Thanks. I will try downloading that.

Thanks for getting back! I was able to download the reference panels. I am now following the command lines exactly as outlined in the `readme` file: `minimac4 1000g_phase3_v5.chr14.with_parameter_estimates.msav pre_impute_YOURFILE.vcf.gz >...

Thanks! I was waiting for our cluster to update the module. It works now!! I also have a last question: Does minimac4 provide QC results and information on excluded SNPs...

Awesome! Thank you.

Hi Jonathon, I've updated my files to the hg38 build recently. The link you provided before (https://share.sph.umich.edu/minimac4/panels/) has reference files for 1000g_phase3_v5, which is for hg19. Can you guide me...